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dna methylation
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0
votes
1
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1.5k
views
Estimate cell proportion from beta values using minfi estimateCellCounts?
minfi
cell proportion
estimateCellCounts
DNA Methylation
5.9 years ago
grayapply2009
• 0
1
vote
2
replies
3.2k
views
WGCNA on methylation data
normalization
DNA methylation
WGCNA
updated 6.7 years ago by
Peter Langfelder
★ 3.0k • written 6.7 years ago by
enora.fremy
• 0
1
vote
2
replies
1.5k
views
Comparing more than 2 experimental groups with MEDIPS?
medips
medip-seq
dna methylation
dmr analysis
updated 7.2 years ago by
Lukas Chavez
▴ 570 • written 7.2 years ago by
mtefit
• 0
7
votes
7
replies
2.4k
views
Using GenomicDataCommons R package to identify cases with both DNA methylation and gene expression data
R
gdc
rna-seq
dna methylation
updated 7.3 years ago by
Sean Davis
21k • written 7.3 years ago by
RichardJActon
▴ 50
1
vote
2
replies
2.1k
views
Odd Sample after SWAN normalisation, DNA methylation analysis EPIC array
minfi
normalization
outliers
dna methylation
densityplot
7.6 years ago
peter.fransquet
• 0
0
votes
0
replies
1.1k
views
iEVORA wrapping up error
differential variability
dna methylation
iEVORA
DVP
7.8 years ago
poojitha.stemcell
▴ 10
0
votes
0
replies
1.5k
views
differential methylation analysis with RnBeads
rnbeads
methylation
methylationepic
dna methylation
8.0 years ago
gabrielrfries
• 0
0
votes
1
reply
1.5k
views
Problem in working with BiSeq - BSraw
dna methylation
biseq
updated 8.2 years ago by
Gordon Smyth
53k • written 8.2 years ago by
ahmad.moousavi
• 0
2
votes
5
replies
2.6k
views
Error when prepare the TCGAdata
tcgabiolinks
dna methylation
updated 8.2 years ago by
Marcel Ramos
700 • written 8.2 years ago by
michaelwxf2012
• 0
1
vote
1
reply
2.7k
views
Beta Value Analysis - DNA Methylation Dataset
dna methylation
illimina 450k methylation
beta
M
significance
updated 8.4 years ago by
James W. MacDonald
68k • written 8.4 years ago by
skids121
• 0
0
votes
0
replies
1.7k
views
DNA methylation 450k data - minfi - preprocessFunnorm - CNV cases vs non-CNV controls
CNV
minfi
preprocessing
dna methylation
8.9 years ago
Thomas
• 0
1
vote
2
replies
1.5k
views
Correlating DNA methylation and Illumina gene expression microarray data
microarray
HM450
dna methylation
cohcap
updated 9.1 years ago by
James W. MacDonald
68k • written 9.1 years ago by
poojitha.stemcell
▴ 10
0
votes
1
reply
1.5k
views
error when using bumphunter package with illumina 450k data
minfi
bumphunter
DNA methylation
illumina450k
updated 9.7 years ago by
James W. MacDonald
68k • written 9.7 years ago by
fleur_p90
• 0
13 results • Page
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Replies
Comment: Question on processing compound protein groups in limpa
by
JKim
• 0
Many thanks. I appreciate your advice.
Answer: Question on processing compound protein groups in limpa
by
Gordon Smyth
53k
Different people have different ways of dealing with compound protein groups. You could just leave them in the analysis, in which case limp…
Answer: Correct usage of limpa for protein input
by
Gordon Smyth
53k
limpa can work on protein-level quantifications, but they must be intensity-based and must be on the log scale. From what I read (<https://…
Comment: A problem occurs when running the monocle2
by
a2a2hset32aa
• 0
Troubleshooting monocle2 errors in R 4.5.1 often points to package incompatibilities, particularly with newer versions of igraph. For resea…
Comment: Deadline Extended: EuroBioC2026 Call for Abstracts
by
a2a2hset32aa
• 0
Attending EuroBioC2026 is an excellent way for researchers to explore the intersection of technology and biology. For those seeking high qu…
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Answer: Question on processing compound protein groups in limpa
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
Answer: Correct usage of limpa for protein input
A: Interpretaion of dendrogram height in WGCNA?
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