Bioconductor Dna methylation

Showing : dna methylation • reset

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940

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minfi cell proportion estimateCellCounts DNA Methylation

4.2 years ago grayapply2009 • 0

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1.8k

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normalization DNA methylation WGCNA

updated 4.9 years ago by Peter Langfelder ★ 3.0k • written 4.9 years ago by enora.fremy • 0

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976

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medips medip-seq dna methylation dmr analysis

updated 5.5 years ago by Lukas Chavez ▴ 570 • written 5.5 years ago by mtefit • 0

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1.6k

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R gdc rna-seq dna methylation

updated 5.6 years ago by Sean Davis 21k • written 5.6 years ago by RichardJActon ▴ 50

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1.1k

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minfi normalization outliers dna methylation densityplot

5.8 years ago peter.fransquet • 0

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754

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differential variability dna methylation iEVORA DVP

6.1 years ago poojitha.stemcell ▴ 10

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1.1k

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rnbeads methylation methylationepic dna methylation

6.2 years ago gabrielrfries • 0

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1.1k

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dna methylation biseq

updated 6.4 years ago by Gordon Smyth 50k • written 6.4 years ago by ahmad.moousavi • 0

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1.8k

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tcgabiolinks dna methylation

updated 6.5 years ago by Marcel Ramos 700 • written 6.5 years ago by michaelwxf2012 • 0

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1.5k

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dna methylation illimina 450k methylation beta M significance

updated 6.6 years ago by James W. MacDonald 65k • written 6.6 years ago by skids121 • 0

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1.2k

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CNV minfi preprocessing dna methylation

7.2 years ago Thomas • 0

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988

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microarray HM450 dna methylation cohcap

updated 7.3 years ago by James W. MacDonald 65k • written 7.3 years ago by poojitha.stemcell ▴ 10

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1.1k

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minfi bumphunter DNA methylation illumina450k

updated 7.9 years ago by James W. MacDonald 65k • written 7.9 years ago by fleur_p90 • 0

13 results • Page 1 of 1

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Answer: Errors in chromosome annotation-biomaRt by James W. MacDonald 65k

If you are just using HGNC symbols for the lookup, and you are trying to get NCBI IDs, then I wouldn't use `biomaRt` because it's based on …

Comment: Help with ENmix readidat by James W. MacDonald 65k

Please don't add to posts from two years ago. Instead make a new post. Also, please read the help page for `readidat`. The only reason to …

Comment: LRT, more than two conditions and pairwise comparisons by James W. MacDonald 65k

In that case, probably easiest to subset to the groups being compared.

Comment: Help with ENmix readidat by minardsmitha ▴ 10

Did you figure this out? I have the same issue.

Comment: LRT, more than two conditions and pairwise comparisons by boczniak767 ▴ 720

Thank you for response, apparently I still don't know much about statistics. In fact I want to campare time-profiles [and the LRT has been …

Votes

Comment: DESeq2- Mysterious interaction suppresses DEGs

Answer: DESeq2- Mysterious interaction suppresses DEGs

Answer: Subsetting RNAseq data | voomaByGroup()

biomaRt not working - lazy table error

Answer: Mac ARM64 build report for BioC 3.19 from 'kjohnson3' reporting ERROR which it

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